DEGs between two samples (Control and Expt)

I am wondering if it is possible to analyze DEGs between two samples but not by cluster. Also, is it possible to generate a feature plot side by side for two samples?

Thank you

Hi Rupendra,

Yes, it is possible to analyze DEGs between two samples. You just have to select the option “Compare a selected cell set between samples/groups” and then select “All” in the “Compare cell set:” menu and the two samples you want to compare in the other two dropdown menus.

Regarding the feature plot, it is currently not possible to generate it side by side for two samples. The only workaround would be to download the two plots separately and then put them side by side outside of Cellenics. We currently have the option to generate multiple plots in the same view only for the violin plot.

I hope this helps.
Let me know if you have any questions.