Hi, is there a way to show differential expression of genes in a dot plot between two conditions?
if you add the conditions as metadata to the samples in the Data Management module, you can then use the “Select data” menu of the dot plot to group the cells by condition on the y-axis.
You can control which genes to show by using the “Gene selection” menu.
Let me know if this answer your question.
Thank you for your response. I should have mentioned that I would like to compare the differential expression between the conditions across clusters too. Is this possible?
Unfortunately that’s not currently possible using the dot plot.
Let me know if you have any other questions.